PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10782_iso_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 700aa    MW: 80441.5 Da    PI: 7.8493
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10782_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.14.4e-2182175190
                                  FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 
                                           +fY+++Ak++GFs+r+++++ +    +  t+r fvC + g++  + ++++k +r+r+++r+gC+a ++++k++
  cra_locus_10782_iso_6_len_2552_ver_3  82 EFYSDFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKATNENKPQRNRKSSRCGCQAYMRISKTT 154
                                           6**************9998877356667999*****************9**********************99 PP

                                  FAR1  73 ...dgkwevtkleleHnHela 90 
                                                +w+vt + ++HnHel 
  cra_locus_10782_iso_6_len_2552_ver_3 155 elgVPEWRVTGFANHHNHELL 175
                                           777789*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1782175IPR004330FAR1 DNA binding domain
PfamPF105511.4E-18298389IPR018289MULE transposase domain
PROSITE profilePS509669.594576609IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-8579607IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-7584611IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MDSRLQVVLH HVAXAVEYAI MSEEVAQMMA VYDDPSDQRS LSFEETSSTE ESPDETRLSL  60
ETTDDLVPYI GQRFATHDAA YEFYSDFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA  120
GNTPVKATNE NKPQRNRKSS RCGCQAYMRI SKTTELGVPE WRVTGFANHH NHELLEPNQV  180
RFLPAYRTIS DADKSRILMF AKTGISVQQM MRLMELEKGV EPGYLSFTEK DVRNLLQSFK  240
KVDPEDESID LLRMCRNIKD KDPNFKFEFT LDSNNRLENI AWSYASSVHS YEIFGDAVVF  300
DTTHRLTVFD MPLGIWVGMN NYGMPCFFSC VLLREESLRS YSWALKAFLG FMNGKAPQTI  360
LTDQNMCLKE AIAMEMQTTK HALCIWLIVA KFPSWFNAVL GERYNEWKAE FYRLYNLESV  420
EEFELGWRDM VNSFGLHTNR HIASLFALRS LWALSYLRSQ FFAGMTTTAH SKSINAFIQR  480
FLSAQTRLTH FVEQVAVSVD FKDQAGEQQT MQQNLQNLCL KTGAPMESHA ATVLTPFAFS  540
KLQEQLVLAA HYASFQTEDG FLVRHHTKVE GGRKVYWIPR EGIISCSCRL FEFSGILCRH  600
ALRVLSTGNC FQIPDRYLPL RWRRISTPST KPPLLTTQND HAEKIQLLQS MVSNLITESA  660
KSRERLDIAT EQVSILLSRI KEHPVCSQGM RELSSIHRNH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087634.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A067LDA90.0A0A067LDA9_JATCU; Uncharacterized protein
STRINGPOPTR_0004s23620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108962124