PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10782_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 514aa    MW: 58943.9 Da    PI: 8.273
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10782_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR127.97.9e-0982140158
                                  FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraet 58 
                                           +fY+++Ak++GFs+r+++++ +    +  t+r fvC + g++  + ++++k +r+r+ +
  cra_locus_10782_iso_2_len_1995_ver_3  82 EFYSDFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKATNENKPQRNRKLQ 140
                                           6**************9998877356667999***********99999977778887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-682140IPR004330FAR1 DNA binding domain
PfamPF105518.4E-10143203IPR018289MULE transposase domain
PROSITE profilePS509669.594390423IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-8393421IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-7398425IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MDSRLQVVLH HVAXAVEYAI MSEEVAQMMA VYDDPSDQRS LSFEETSSTE ESPDETRLSL  60
ETTDDLVPYI GQRFATHDAA YEFYSDFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA  120
GNTPVKATNE NKPQRNRKLQ DVDVKLLREE SLRSYSWALK AFLGFMNGKA PQTILTDQNM  180
CLKEAIAMEM QTTKHALCIW LIVAKFPSWF NAVLGERYNE WKAEFYRLYN LESVEEFELG  240
WRDMVNSFGL HTNRHIASLF ALRSLWALSY LRSQFFAGMT TTAHSKSINA FIQRFLSAQT  300
RLTHFVEQVA VSVDFKDQAG EQQTMQQNLQ NLCLKTGAPM ESHAATVLTP FAFSKLQEQL  360
VLAAHYASFQ TEDGFLVRHH TKVEGGRKVY WIPREGIISC SCRLFEFSGI LCRHALRVLS  420
TGNCFQIPDR YLPLRWRRIS TPSTKPPLLT TQNDHAEKIQ LLQSMVSNLI TESAKSRERL  480
DIATEQVSIL LSRIKEHPVC SQGMRELSSI HRNH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538964.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLK4B1P40.0K4B1P4_SOLLC; Uncharacterized protein
STRINGSolyc01g103180.2.10.0(Solanum lycopersicum)