PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1072_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 283aa    MW: 31905.5 Da    PI: 6.6851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1072_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-10114159555
                                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                          h ++Er+RR+++   f  L  ++P +     kK +K ++L  +++Y+k+Lq
  cra_locus_1072_iso_2_len_1039_ver_3 114 HIIAERKRREQLSRQFVALSGIVPGL-----KKTDKTSVLGDTINYLKHLQ 159
                                          899***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-15106174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.151109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-8114159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.44E-9114162No hitNo description
Gene3DG3DSA:4.10.280.108.1E-15114171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
ILNMEAPSTS WFSDLGLLEN PLVSDECDMF DFLNQEYLSA AALGKDSQAL CASSAMNIEA  60
PQQWPDNNTY NSFENLTEML PEQVNLEDAA AKMAPIRKKN SSSRGREPSQ TYDHIIAERK  120
RREQLSRQFV ALSGIVPGLK KTDKTSVLGD TINYLKHLQE KVKKLEEKTT KKSMESVVLA  180
KKSQLPFEDE DKGSSHEQSF PHIEAKVFDK NILIRIQCLK HKGVLLNALS SIMKFNLAVT  240
KINATPFGRW ALEITIIAQM ETEFSLTIQD LIESLQSALK KNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027109522.12e-84transcription factor bHLH18-like
TrEMBLA0A068V9K61e-79A0A068V9K6_COFCA; Uncharacterized protein
STRINGAquca_010_00012.12e-62(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461