PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10287_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 638aa    MW: 74294.7 Da    PI: 7.4037
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10287_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.73.8e-2360144190
                                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 
                                           +fYn+Y+ke GF +r+s+s  +++ +  +++++ Cs  g++++++ +     ++r+etrtgC a++++k+ ++
  cra_locus_10287_iso_2_len_2330_ver_3  60 NFYNAYGKEQGFGIRVSNSWFRSKRKDRYRAKLSCSSAGFKKKTEAN-----NPRPETRTGCPAMIVIKLVDS 127
                                           6*******************9999999**************998877.....9******************** PP

                                  FAR1  74 gkwevtkleleHnHela 90 
                                           ++w+v ++el+HnH+++
  cra_locus_10287_iso_2_len_2330_ver_3 128 QRWRVVEVELQHNHHVS 144
                                           **************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-2160145IPR004330FAR1 DNA binding domain
PfamPF105512.0E-23266358IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MEVVCLNSEP TFDEGDEFGD DGNCNTAEHD DEVCRMPQMK REPPMPTIGL EFNSFDEAYN  60
FYNAYGKEQG FGIRVSNSWF RSKRKDRYRA KLSCSSAGFK KKTEANNPRP ETRTGCPAMI  120
VIKLVDSQRW RVVEVELQHN HHVSPEVKRF YKSHKKMILA AKQAQQSKPV TEIHTIKLYR  180
TSTVDGVCNG YSKLEQRDGQ PLIDQSKHLK LKEGDAAAVY NYFCRMKLTN PNFFYLMDLD  240
DEGHLRNIFW ADSRSRCAYN YFCDTVAIDT TSLTCKYEVP LVSFVGVNHH GQSVLLGCGF  300
LGHESVEYFT WMIKSWLTCM LGQHPQVIVT DQSKLLQVAV AEVFPHARHC YSLSSIMQRI  360
PEKLGGLKGY EAIKRQLNKA VYDSLKIAEF ETSWDNLMSQ HGLSNNKWLQ SLYEDRQWWV  420
PVYLKDICFV GIIPVKENEG MKSFFDGYVH KHTSFKEFLD KYDLALQRKN MKEAIGDLES  480
RNSKFELKTK CNFELQLSEV YTKAIFEKFR AEVEGMYACF NTRQVYVNGP ILTFVVKERV  540
EVDGKEKEDA LNVLNYNGVE EIPSQYILPR WYRNYKCRFS VDHRLKDVYM NDHVKRYNHL  600
CKHAIQIVEE GFESPERYRA LMQHLEELMS KFTLADDT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282775.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_010648676.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_015885834.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A067KEY60.0A0A067KEY6_JATCU; Uncharacterized protein
STRINGPOPTR_0006s27240.10.0(Populus trichocarpa)