PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre13.g572950.t1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family E2F/DP
Protein Properties Length: 775aa    MW: 78102.4 Da    PI: 4.5855
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre13.g572950.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP27.26.6e-091373971
             E2F_TDP 39 vknkrRRiYDilNVLealnliek....kekneirwkg 71
                        +k +rRR YD+lNV+ + +lie+    k k+ i w+g
  Cre13.g572950.t1.1  1 MKSIRRRCYDALNVMLSAGLIERvaggKGKKLIVWQG 37
                        6889**********************99*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023192.2E-6137IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.7E-7240IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-5238IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011380.007846287IPR014889Transcription factor DP, C-terminal
PfamPF087811.3E-7181256IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.75E-7181235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MKSIRRRCYD ALNVMLSAGL IERVAGGKGK KLIVWQGSSA PRASLSDTDT AQKRQEVERK  60
RQQLQELERQ HAALQALLLA RAGAGTLNGA AEGAGEGAGA GSAACSNQDK GLDCAVGSTL  120
AHCVAAAAAG GPEGSAAAPA AAGTTAAAGH PNSAPVTGSA PSAGAGGGSC ALACVRPPPL  180
QIQLPFMILQ VRAGCDVAVR ASEDKRCVEL EMADGEAFHM HDDQSILQQL MLQRREQAQA  240
QAQAQAQEQA QAQEQAQEQA RVQAQAQVQA QVQAQAQAHV QAQAQEQAPQ ANRLPVLTPA  300
LVGPLSDWRQ SQQGQPQEQA QAAVVAAAAL GAAAAEPEIA AAVGHIQQGD QVFPQQQQQQ  360
LAGAAAAGGA AAARPAAVAA AMAAAVTAAA EPACDPQPFQ HLSQDWAAHM LRWRQESSSS  420
PSGFGAVGAS AAAEGATDTL PPLQQLPQSA AALQTAAPRL SESPMSATWP MQPAPATSGG  480
GSSSGSGTGS FDYWGFGLGV GLTNAGGVTG AQASQPQLQL QQQLQQQQLQ QPTATPHLHV  540
RVHPNAHIGL NLQQPVYQLP MLPQLAYPQM PQPQLLQPQP HTLQLLPQPL QVHAPQAPLQ  600
ELQQTWAGDG GCAGGAAATL ADDELWLLAS PLEDLCFSDG AAPGGGCYAE AGSRLSPLLP  660
ANANANAAAT SLEFDRAQAS CTGTAMGVAA GGGAWDGQSG TGSGSNSNSS GGAPGGTAAD  720
DWVATAAAAA GLLGDSGSGT AEWGGTAEWG GEGDGCDAYF ASPAEPSSFF AAAD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre13.g572950.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-