PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre07.g323000.t1.2
Common NameCHLREDRAFT_206363, DP1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family E2F/DP
Protein Properties Length: 647aa    MW: 67124.9 Da    PI: 8.8611
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre07.g323000.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.63.2e-26153231371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         +k+Lr++++k   ++ek+e+ g++t+neva+eLv e             d+kn+rRR+YD++NVL+a+++i+k ek+ei w+g
  Cre07.g323000.t1.2 153 SKGLRHFSMK---VCEKVEAkGRTTYNEVADELVGEmskmeamnkngqyDEKNIRRRVYDAINVLMAMDIIQK-EKKEILWRG 231
                         59********...*******9****************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-41149235IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.7E-33151231IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-24153231IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.94E-20154232IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.58E-38236340IPR014889Transcription factor DP, C-terminal
SMARTSM011387.7E-57238390IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.49E-36238377No hitNo description
PfamPF087816.0E-28241345IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MDGPQVKLEP GAVAPRTGTE LDNGAFAQEL QDLGLLDFAQ DCDFSRFAAG TGGLPPSARH  60
PSGLAGPVVG HNNPPPQPTN TLEIQQCQQT NQATDLATTR ALQVLASTRL QLNALQQASY  120
TPRPTGSAAT DGSGSKRRKT SRGADASGSR GGSKGLRHFS MKVCEKVEAK GRTTYNEVAD  180
ELVGEMSKME AMNKNGQYDE KNIRRRVYDA INVLMAMDII QKEKKEILWR GFPRLSCNSA  240
DRVKAERDAK IKEVEQKQLY LQDMVEQQKA LKKLLERSAA RQSNGANTSE TKLFLPFILV  300
QAKPDATVEV KISDDMMDVQ FDFYHSPFQI HDDSHVLKKM AEHQGRQPPP PLPNQPPTAG  360
ALAGGLPPQF PPGLGVPPFL PPPLTNGALH GNLLGGMHSP MADHAHLAQL AQAHGNPLTF  420
GFAPPLYTHP SGQHNHHQHH HHHHPQQQQL QQPHQLMQQG GDSGLGGVSR PSGSQGGAPG  480
AAGTVAGQQG AGGGAGPGAA GPAQLLQALQ AQQGPQQGRR SSGGAPGAPG GMGPGGMPPL  540
PGLAGLPAAA APAGPSAALG PAGGSGQLLA PQLSGQMSGS LPLPPVLAPP PSLGVLPLLP  600
HAPPLNAGAL QLPPGLASAL AAPPPLTLQP GPQGPSQQAS AFPLMA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-31148233590PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.89700.0normal conditions
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4174910.0DQ417491.2 Chlamydomonas reinhardtii DP1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001700867.10.0DP1 transcription factor
TrEMBLQ1ZZK30.0Q1ZZK3_CHLRE; DP1
STRINGEDP071210.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25111734
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-63Transcription factor DP
Publications ? help Back to Top
  1. Bisova K,Krylov DM,Umen JG
    Genome-wide annotation and expression profiling of cell cycle regulatory genes in Chlamydomonas reinhardtii.
    Plant Physiol., 2005. 137(2): p. 475-91
    [PMID:15710686]
  2. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]