PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre01.g052300.t1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family E2F/DP
Protein Properties Length: 514aa    MW: 51684.8 Da    PI: 4.8624
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre01.g052300.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.9e-2792157171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         r+++sL++lt+kfl+l++++++gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk+kn+irwkg
  Cre01.g052300.t1.1  92 RYDSSLGMLTKKFLNLINTARDGILDLNQAAETL---KV--QKRRIYDITNVLEGVGLIEKKSKNNIRWKG 157
                         6899******************************...88..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-2889158IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.63E-1792155IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-3492157IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-2494157IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440749.68E-30170276No hitNo description
CDDcd146604.87E-44171277No hitNo description
PfamPF164211.4E-28174275IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSKRHADTSY EASAKRHQAA RGDDSGDDDE DYEPRGRHRG ADPDDQEQSS YGGGDEDDED  60
RQSSEQHTAS RSVKRKAGRA AGSPGSHTGG CRYDSSLGML TKKFLNLINT ARDGILDLNQ  120
AAETLKVQKR RIYDITNVLE GVGLIEKKSK NNIRWKGAGD GGRGGDADPD LDRLRSDMSK  180
LDEQERELDD NIRFMTSAIQ ALSENPLNKP RLYVTDEDVM GLPCFANDTI FAVKAPPGTT  240
LEVPDPREAA DPRDGQMRYR IVLRSTKGPI DVYLVQHTNN VGTTSQQGQQ GGAGGGQQPS  300
ASAEPAGSTV GPAGAAGGAM SGGAMGAPAV APAASGAAAA AAVGGAPAAA GPAGVAPAAA  360
AAAAAPAAAA AAEPVPSAVK QEQQPPAVRA PVPGLAGQGV ISPAAFHFMP QSGTPLSAMA  420
GGASGHNFFA PMSPNAVDLA ALAASFGGAG PGGALGRVSG LIPGGGPAGH GGLGGHGGVE  480
LDPGQWFDAP GDGAGGGAAA YFGADGDNFF AEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-2392159775PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKVQKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4174920.0DQ417492.2 Chlamydomonas reinhardtii E2F1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001689788.10.0E2F family transcription factor
TrEMBLQ1ZZK20.0Q1ZZK2_CHLRE; E2F family transcription factor
STRINGEDP095260.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP32581314
Representative plantOGRP12251749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.32e-65E2F transcription factor 1