PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.191
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 548aa    MW: 59656.5 Da    PI: 9.009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.191genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05628123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                 ++C++C+k F r  nL+ H r H
  evm.model.supercontig_9.191  6 FVCEICNKGFQRDQNLQLHRRGH 28
                                 89*******************88 PP

2zf-C2H215.55e-0582104123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  +kC +C+k +  +s+ k H++t+
  evm.model.supercontig_9.191  82 WKCDKCSKKYAVQSDWKAHQKTC 104
                                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.94E-8528No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355984777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.94E-877103No hitNo description
SMARTSM003559482102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTST EVKKRVYICP EPTCVHHNPA  60
RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALAEENNKV NQGLMNQMGS NLQTQVPAEL MSSSMAGLNP NTINNPSIGS  180
DTFNTFDPKN PLKSLAQDLM PMPFKSMNMA GAGAGMFSSS SGTLFGGPRS NIASSSSSLQ  240
LSSNSTSSGF NYFHPDTKNG GSMSQLSAGS AHMSATALLQ KAAQMGATAS NSINSPMMQK  300
SFTGSMVGSD HNNHHHHHHQ IQGQLSSVRP SSSPAYSSAV QQHATNNSSS YDHIPPVMQN  360
HDDDRHHQSS HMVGINGGSS SSSTGLLPNQ LLRKNTQEIQ QIFDPSGNCS SAMNDIGILT  420
NMFMAGGEQN QGFPKNMEQE ESRSGSSLVQ GGRAALMADN RNNQIITGGS TRFGSGSSNG  480
GSSSDMMTLD FLGIGSVSRP VNLHEQQQKS LEMEAMSQQR LPLMNPYNQQ QLSHGDHSAI  540
EKPIWDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3378141366Zinc finger protein JACKDAW
5b3h_F2e-3378141366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_9.191
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906681.10.0protein indeterminate-domain 9-like
SwissprotQ9SCQ63e-98IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3N7FC770.0A0A3N7FC77_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_9.1910.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15443818
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-82indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]