PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.102
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GATA
Protein Properties Length: 145aa    MW: 15656.6 Da    PI: 10.164
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.102genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.5e-194478135
                         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  evm.model.supercontig_9.102 44 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 78
                                 ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.3083874IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-123877No hitNo description
SMARTSM004012.3E-123894IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-154278IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.46E-124378No hitNo description
PfamPF003208.4E-174478IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404469IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MLDPSERGLD SEEMKRKYSS GVSSDESQGS SHNNNSHNET KKTCADCGTS KTPLWRGGPA  60
GPKSLCNACG IRSRKKRRAV IGGGSEKKPK RAGNSNDSLN ERLLALGREV LMQRSTVEKQ  120
RRKLGEEEQA AVLLMALSYG SVYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_9.102
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4415753e-38AM441575.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X044576.17, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906917.11e-101GATA transcription factor 15-like
SwissprotQ8LG105e-57GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A061EPR17e-66A0A061EPR1_THECC; GATA transcription factor 15, putative
STRINGevm.model.supercontig_9.1021e-101(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.19e-56GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]