PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_74.95
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GATA
Protein Properties Length: 317aa    MW: 35058.3 Da    PI: 9.0762
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_74.95genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.92.5e-122452735
                         GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  +TplWR+gp  ++ LCnaCG ++r kg+
  evm.model.supercontig_74.95 24 ASTPLWRNGPPEKPVLCNACGSRWRTKGT 52
                                 57********88888***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.00111666IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-82452IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.76E-62456No hitNo description
PfamPF003204.8E-102452IPR000679Zinc finger, GATA-type
CDDcd002021.11E-102565No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDVYGKNLGH KKPLLKAFGF MNNASTPLWR NGPPEKPVLC NACGSRWRTK GTLANYTPLH  60
ARAEPDDCED HRFSRVKSIS INRKQEVKIL KRKPNQDSFV VGRPSADHNQ GFRRVVDEDA  120
SNRSSSGSAI SNSESCAQFC SADASDLTDC KLLKKHVLFS YTKSHWVESY NQLKLQKCRS  180
STGESLVAKG PNPIVSNTLV NVSRFWEGQS QHFPGTKTTM KSPKRVNMKG SYENKEIIDN  240
DVSCFSPRSL FALPPDGSSL MLDSLNFIDE SSDQDLLLDV PSNSSFPQAE LLHPNLSFGS  300
QASTSSSSAY PQHLRP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_74.95
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895297.10.0GATA transcription factor 26-like
SwissprotQ8W4H17e-43GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A061GB101e-63A0A061GB10_THECC; GATA transcription factor, putative isoform 1
STRINGevm.model.supercontig_74.950.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.22e-41GATA transcription factor 26