PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.238
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HRT-like
Protein Properties Length: 340aa    MW: 37960.4 Da    PI: 9.5714
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.238genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like56.44.9e-18273303131
                     HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                                  +CGv+l+dG+ C+ +Pv gRKRCeeHKG++i
  evm.model.supercontig_7.238 273 TCGVLLSDGTSCTLPPVLGRKRCEEHKGRKI 303
                                  7***************************997 PP

Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGADEFSLLA PRLKREDYKR TKHDTCFSKW KVLVGANDWE DYCKGKEGVG RYRVYNLPNK  60
SCPGVYELGI AVAHSGLERD VVKFAPDDIV VTYLGQAEDV RSRLQRYGRS GAHLASIYTT  120
SNPIHSQSDS SPRGSGLFEE IFSRGCSVVF RWAPMKSKKE AEETEAKLLD TFDYAWNKGS  180
NVIRRPDEIL KKLDEIASST GRFSSLYRIF VPLTQKKVGI KIKGDKLLLQ KNKVSADADE  240
ESNNFLSGVI KFSRSRPQLV SGKRETDVTP SNTCGVLLSD GTSCTLPPVL GRKRCEEHKG  300
RKIYGYSFKL ITEGKSPSSP DLCMNQALFM AKIPMLYVV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_7.238
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907781.10.0LOW QUALITY PROTEIN: protein EFFECTOR OF TRANSCRIPTION 2-like
SwissprotF4K9331e-105ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A1Q3BK101e-121A0A1Q3BK10_CEPFO; Uncharacterized protein
STRINGevm.model.supercontig_7.2380.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Representative plantOGRP52481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-101effector of transcription2