PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_64.66
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 486aa    MW: 50629.2 Da    PI: 9.5086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_64.66genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-056082123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                 ++C++C+k F r  nL+ H r H
  evm.model.supercontig_64.66 60 FVCEICNKGFQRDQNLQLHRRGH 82
                                 89*******************88 PP

2zf-C2H215.84e-05136158123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  +kC+ C+k +  +s+ k H++t+
  evm.model.supercontig_64.66 136 WKCERCSKKYAVQSDWKAHMKTC 158
                                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.91E-75982No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.7E-56082IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355200101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-5124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.91E-7131157No hitNo description
SMARTSM0035577136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MAVSTASREV SISSSDNQQI QATPLTVVPQ KKKRNLPGMP DPDAEVIALS PKTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTSKEVRKRV YVCPEPTCVH HNPSRALGDL  120
TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT KEYRCDCGTI FSRRDSFTTH  180
RAFCDALAEE NARSQQTLAV TGGEGNSDQN AKSGVVVASP PPPPLTPSTT IVSPGLSMQS  240
SEMSENSMRV SPPTQGAITC LSSTGTATVT TPRSSCLNTS TVFASIFASS LPAAAALVEP  300
TSLSLSSSLY LSSNGASSSL FPPGGQDRCR YAPSPQPAMS ATALLQKAAQ MGAAASSPSL  360
LRGLGLAVPS SSGQDSHVTA EGNPVTAGLG LGLPSEGTSS LTDGIMGPSS LFGNRPTTLD  420
LLGLGIGAGG ASTSGLSALL PSFGGGFGVG AAPSTSAPSY GRGGNSPGQI WESTPERKPN  480
PSALL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33132193364Zinc finger protein JACKDAW
5b3h_F2e-33132193364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_64.66
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896421.10.0protein indeterminate-domain 2-like isoform X1
SwissprotQ9SCQ61e-143IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2P5RUL40.0A0A2P5RUL4_GOSBA; Uncharacterized protein
STRINGevm.model.supercontig_64.660.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-117indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]