PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_638.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family S1Fa-like
Protein Properties Length: 89aa    MW: 9886.79 Da    PI: 10.4018
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_638.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA135.31.5e-422288470
                         S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                                 + +e kG+nPGlivllvvgglll+fl+gny+ly+yaqk+lPP+kkkP+skkk+k+eklkqG+++PGe
  evm.model.supercontig_638.2 22 NDAEIKGFNPGLIVLLVVGGLLLTFLIGNYVLYTYAQKTLPPKKKKPISKKKMKKEKLKQGISAPGE 88
                                 6789**************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190133.0E-41988No hitNo description
PfamPF046896.0E-402488IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MEEEFVDFSD RVPPNINRVK INDAEIKGFN PGLIVLLVVG GLLLTFLIGN YVLYTYAQKT  60
LPPKKKKPIS KKKMKKEKLK QGISAPGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_638.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903755.12e-56DNA-binding protein S1FA-like
SwissprotQ7XLX62e-15S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLW9SCA37e-26W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGevm.model.supercontig_638.28e-56(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769
Representative plantOGRP50951322
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]