PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_625.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27803.9 Da    PI: 10.5142
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_625.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.91.1e-221762449
                                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                 +n+sn qvtfskRr+g++KKA+ELS+LC+ae+a+i+fs+  k++ +
  evm.model.supercontig_625.4 17 NNESNLQVTFSKRRAGLFKKASELSTLCGAEIAIIVFSPGRKVFSF 62
                                 799************************************9999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-31665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.39666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-25789IPR002100Transcription factor, MADS-box
CDDcd002655.06E-32772No hitNo description
PRINTSPR004041.1E-19828IPR002100Transcription factor, MADS-box
PfamPF003191.8E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MARKSKGRQK VEMVKMNNES NLQVTFSKRR AGLFKKASEL STLCGAEIAI IVFSPGRKVF  60
SFGNPCVETV LECFVSGNPP QTASGTMKLI EAHRNASVRE LNMQLTQVLN QLEIEKKRGE  120
ELNHMKKANE NKYWWMARKN DLSLTQLQQL KASLDELKKN VAKHAEKIVI HTQNNHHPHP  180
HPHPHLPLPH PHPHHHHPNH PFFLGSSSGG AGLPFETKPA GFSSSIVPFN NPNMMPPKYH  240
GFGQGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-17792186Myocyte-specific enhancer factor 2A
3kov_B3e-17792186Myocyte-specific enhancer factor 2A
3kov_I3e-17792186Myocyte-specific enhancer factor 2A
3kov_J3e-17792186Myocyte-specific enhancer factor 2A
3p57_A3e-17792186Myocyte-specific enhancer factor 2A
3p57_B3e-17792186Myocyte-specific enhancer factor 2A
3p57_C3e-17792186Myocyte-specific enhancer factor 2A
3p57_D3e-17792186Myocyte-specific enhancer factor 2A
3p57_I3e-17792186Myocyte-specific enhancer factor 2A
3p57_J3e-17792186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_625.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386370.0AC238637.1 Carica papaya BAC clone 99B01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904046.11e-152agamous-like MADS-box protein AGL62
SwissprotQ9FKK27e-57AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A067EEZ46e-91A0A067EEZ4_CITSI; Uncharacterized protein
STRINGevm.model.supercontig_625.40.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-59AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]