PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_625.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 401aa    MW: 44163.4 Da    PI: 4.3228
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_625.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.94.8e-172064246
                                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                                 + en+   +vtfskRr  ++KKA+EL++LC  +v +i+fs+ ++ 
  evm.model.supercontig_625.3 20 KMENEASLKVTFSKRRSSLFKKASELCTLCRPDVGLIVFSPGNRA 64
                                 67999999********************************98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-251170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.1611171IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-231286IPR002100Transcription factor, MADS-box
CDDcd002651.96E-291280No hitNo description
PRINTSPR004049.0E-161333IPR002100Transcription factor, MADS-box
PfamPF003191.8E-192067IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-163348IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-164869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MADERTSSKR KGRQKIELKK MENEASLKVT FSKRRSSLFK KASELCTLCR PDVGLIVFSP  60
GNRAFCYGNP NIDIVIDRFL SIDVRSARDP DNDNDTQQTI NRITKAQDKE EAARKRGKEL  120
KQRRKGLMKE LWYTRSMDKF NLEELEVLDA GMKALWNDVA ELAKKLKKEQ GNSSSAEGSP  180
RDDGMFYSDP AMKALTTLPM PSLPSNPTHE YAPSSTNSTP PLSSFCNIDS GNPNIMMMDN  240
PSNDLGMALD PVDDLEGMPG DLFNNLVMIE SDDPIAALNA GDNPYTMSDA FGNQTATMDI  300
NLSNDPNIRP NEFLNLSTMP HAPNDPISTT SDALNMIRIV PDDSNLDSVF DGFTLEMLFA  360
DPLDDENFIV DNPNEAANGD NPETMSPPLA GNVPGSDQGF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_625.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4103950.0KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911410.10.0agamous-like MADS-box protein AGL62
STRINGevm.model.supercontig_625.30.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-32AGAMOUS-like 62