PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_62.24
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 372aa    MW: 42307.9 Da    PI: 6.4384
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_62.24genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-1819108299
                                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                  +k ++ps+v+   +l l+k+f+++h  + +++k ++ledesg+++e k+ ++k +    l++GW++F  a++L egD++vF+
  evm.model.supercontig_62.24  19 IKCMLPSHVTGGFWLGLSKQFCSNHL-P-KQDKIIILEDESGEKFETKFLVDKVG----LSGGWRGFSMAHRLVEGDVLVFH 94 
                                  6899******************8884.3.37789***************666655....*********************** PP

                                  E-SSSEE..EEEEE-S CS
                           B3  84 ldgrsefelvvkvfrk 99 
                                  l+++ +f  +v ++r+
  evm.model.supercontig_62.24  95 LVESCKF--KVYIVRS 108
                                  *998888..8888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-2212110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-2013110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-2416107No hitNo description
SMARTSM010199.3E-2018109IPR003340B3 DNA binding domain
PROSITE profilePS5086312.16718109IPR003340B3 DNA binding domain
PfamPF023627.7E-1619108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MERAKEVQAN LSCEFPSMIK CMLPSHVTGG FWLGLSKQFC SNHLPKQDKI IILEDESGEK  60
FETKFLVDKV GLSGGWRGFS MAHRLVEGDV LVFHLVESCK FKVYIVRSNG TDEVDGALGL  120
LKLDACSRET DFVKDIGICV REVKPLKLED VSEENVRNNS LMFCDTKPIP EPQHPRSKNL  180
EPEVQDGIRL SDSFIEFKQV KSFKDFSICV NGLIINSMFS KHLLVKYYEL CCSQKSFLHD  240
HLLEGLNCGL ITGIITETIN IADAIRASKL TTSQEDFFIW EKTLKAFGDL GMNVGFLHVR  300
LYELLRLALK SNRYKAARLE WNQAAEEKRV IEAKIVELNM TMHRLDTEIK SLARNDHELE  360
LKFQEVANAP W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_62.24
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896622.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A1Q3C5S41e-161A0A1Q3C5S4_CEPFO; B3 domain-containing protein/DUF724 domain-containing protein
STRINGevm.model.supercontig_62.240.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16718911
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-38B3 family protein