PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_62.23
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 283aa    MW: 32954.6 Da    PI: 9.7769
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_62.23genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-17134224199
                                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                  f+k +++s+v+   +l lp +f+++h  ++    + t+tl +e+ +++  k+  +k++    l++GW++F+ +++L +gD +
  evm.model.supercontig_62.23 134 FVKPMLQSHVTGGFWLGLPVQFCKTHlpKY----DETITLVNEEQEEFPTKYLADKTG----LSAGWRGFAIDHQLVDGDAL 207
                                  89************************5433....459***************666666....******************** PP

                                  EEEE-SSSEE..EEEEE-S CS
                           B3  81 vFkldgrsefelvvkvfrk 99 
                                  vF+l++ +ef  +v ++r+
  evm.model.supercontig_62.23 208 VFQLVSPTEF--KVYIIRA 224
                                  ***9876666..9999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-21128225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-24128225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-24132223No hitNo description
PfamPF023621.5E-15134224IPR003340B3 DNA binding domain
SMARTSM010195.6E-22134225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083134225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVEAKLSYEQ IRLKRLEENK KRMEELNLNK LSKALRKSAK PSPVELRYEQ AKQVKPRAAR  60
LPADLTPLRR SNRVADKPPP NYKDEPVEPL RGVRRSYQRR DLLNRVYASD KARLYAIERA  120
EQVRSGLEPE FPSFVKPMLQ SHVTGGFWLG LPVQFCKTHL PKYDETITLV NEEQEEFPTK  180
YLADKTGLSA GWRGFAIDHQ LVDGDALVFQ LVSPTEFKVY IIRANESDSE DYKDDERDPE  240
TTHSNRRSKR IKTEVINLLV KYSTNKENLG TFSYCKKDWF WF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_62.23
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896689.11e-178B3 domain-containing protein At3g19184-like
RefseqXP_021896690.11e-178B3 domain-containing protein At3g19184-like
SwissprotQ1G3M32e-93Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A061E0U41e-109A0A061E0U4_THECC; AP2/B3-like transcriptional factor family protein, putative
TrEMBLB9HRZ61e-109B9HRZ6_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_62.230.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-96B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]