PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_60.75
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 274aa    MW: 27973.3 Da    PI: 10.3893
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_60.75genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.84.6e-3931125296
                          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82 
                                  a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++    s s+ +
  evm.model.supercontig_60.75  31 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStV--SVSVRG 110
                                  78****************************************************************99977732..222222 PP

                          TCP  83 s.nsssgkaaksaak 96 
                                  s + s +++++s+  
  evm.model.supercontig_60.75 111 SnSTSLSSSSTSSSI 125
                                  202222233333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2093791IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-3337123IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSNSDAPNNG LANGSIVDPQ RQQPPGNGAL AVKKPPSKDR HSKVDGRGRR IRMPIICAAR  60
VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVSVSVRG SNSTSLSSSS  120
TSSSISSSLD HKPLLGPAPF ILGKRVRTED DAGGKDDGGV TVGPTVGSIV GPTTPGGFWA  180
LPARPDFGQV WSFAAAAPPP EMVMQPGGAA AVSQQQTLFV QQQQHAAAAA AAVAAMGEAS  240
AARVGNYLPG HLNLLASLSG GPGSSGRREE DPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_60.75
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896879.10.0transcription factor TCP21
SwissprotQ9FMX22e-97TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A061E2201e-127A0A061E220_THECC; TCP family transcription factor
STRINGevm.model.supercontig_60.750.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Representative plantOGRP85141016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-53TCP family protein