PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_54.67
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 202aa    MW: 22769.8 Da    PI: 9.7539
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_54.67genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.91.1e-17550449
                                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                 +n+sn qvtfsk r  ++KKA+ELS+LC+a++a+i+fs   k++ +
  evm.model.supercontig_54.67  5 NNQSNLQVTFSKCRVRLFKKASELSTLCGADIAIIVFSLGRKVFSF 50
                                 79************************************88887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.927154IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-14153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-17371IPR002100Transcription factor, MADS-box
PfamPF003192.1E-19450IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-61631IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-63152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVKMNNQSNL QVTFSKCRVR LFKKASELST LCGADIAIIV FSLGRKVFSF GYPSIETLVE  60
CFISCNPPQV VSGTEKLIEA HRTLTRSKDL NQTKNANENE CWWMGPKEDL SLAQLQQLKA  120
SLYELKKIVA QHAEKIVIHT LIFVFLILIL IIIINLIILF FLGSSSSRAS LPYEIRPARF  180
RSSVVPFNNP NMMPPGYHGF F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_54.67
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897680.13e-95agamous-like MADS-box protein AGL62
TrEMBLA0A067EEZ45e-54A0A067EEZ4_CITSI; Uncharacterized protein
STRINGevm.model.supercontig_54.671e-147(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-27AGAMOUS-like 62