PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_51.120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25270.9 Da    PI: 9.182
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_51.120genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.32.7e-201153345
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                  i+n+s r++tf kR+ng++KKA+EL +LC+++ ++ii+s+ ++
  evm.model.supercontig_51.120 11 ISNESTRKITFQKRKNGLMKKASELATLCGINMCMIIYSPYNT 53
                                  9**************************************9764 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.353149IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-11323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-24495IPR002100Transcription factor, MADS-box
CDDcd002663.54E-28485No hitNo description
PfamPF003191.2E-191152IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKGKKVKLAL ISNESTRKIT FQKRKNGLMK KASELATLCG INMCMIIYSP YNTQLEVWPS  60
PSGVQSILND FNAMSKIDQS KKMLNQEAFI RHSMKKTKDQ LNKQRKDNCD KEIIQFMFDS  120
LNGKPLSNLT AKDLKDLGCK IKHFSKDIDK MIDRLTIADQ KFENAQIKTS DINLNDGDNL  180
QNSSKNDPWL IDFGLGKMIM PMEDNDNENI ENNNNNNDNG AA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_51.120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898170.11e-145agamous-like MADS-box protein AGL80
SwissprotQ9FJK37e-40AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLU5GF693e-52U5GF69_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_51.1201e-160(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-42AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]