PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_5.261
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 206aa    MW: 22000.4 Da    PI: 7.1089
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_5.261genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.31.7e-3536164689
                          TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssas 83 
                                  +++ ++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++ +a ++           s+ 
  evm.model.supercontig_5.261  36 SSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTVPAAQVsssaG--PAPLSS- 114
                                  6789********************************************************7777733322111..111111. PP

                          TCP  84 nsssg................................................k 89 
                                      +                                                +
  evm.model.supercontig_5.261 115 ----SpssvscrvhpvgvggaqgiftmgpppscrldlcqpvglqysttagngfR 164
                                  ....11222344444555555555566666666666665555444444444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.1E-3137179IPR005333Transcription factor, TCP
PROSITE profilePS5136927.1723892IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVLNDFSSTE HNHHHNSNLN SLNESSPVVP RKSASSSSRD RHTKVNGRGR RVRMPALCAA  60
RIFQLTRELG HRSDGETIEW LLRQAEPSII AATGSGTVPA AQVSSSAGPA PLSSSPSSVS  120
CRVHPVGVGG AQGIFTMGPP PSCRLDLCQP VGLQYSTTAG NGFRHMPFTA LLLQPVTAAA  180
AEEDEETDDK QRQQQGVLED HHEHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_5.261
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908705.11e-150transcription factor TCP11-like
SwissprotQ9SJK72e-44TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A061ETZ03e-83A0A061ETZ0_THECC; Proliferating cell nuclear antigen gene-controlling element binding factor, putative
STRINGevm.model.supercontig_5.2611e-150(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152651618
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.12e-44TCP family protein