PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_48.75
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 544aa    MW: 58963.6 Da    PI: 8.7104
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_48.75genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05114136123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  ++C++C+k F r  nL+ H r H
  evm.model.supercontig_48.75 114 FVCEICNKGFQRDQNLQLHRRGH 136
                                  89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-6113136No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5113136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.017114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949114136IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SMARTSM00355220155185IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.57E-6185210No hitNo description
SMARTSM00355160190210IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MSSITAGDVG GGGGSFSSGN INGGSSSQEV VVLQQQEQQV PVVVLNHHHH HHHPHHLNSS  60
SSLASSTSNS NGSITQQQQK PPPPKKKRNL PGTPDPSAEV IALSPTTLMA TNRFVCEICN  120
KGFQRDQNLQ LHRRGHNLPW KLRQRTSSEI RKRVYVCPEP SCVHHNPARA LGDLTGIKKH  180
FCRKHGEKKW KCDKCSKKYA VHSDWKAHSK TCGTKEYKCD CGTIFSRRDS FITHRAFCDA  240
LAEENNKVNQ GLLMAANNNI AQAANQVIPE LNPTQSAKMA SGFSHQETKN NNALTMAMFS  300
SSSTSLFGNA RSLIPTSSSS SNCLQLNGIN SSSIFEGINC NNNGGLRGDL QLSGSASMSA  360
TALLQKAAQM GATSSGNTTV MNSNTGSCMD SPLMMQKSFV MTTMAAPPSF GCTQNNHQSQ  420
TLMAMNQTFN SNSNNMGMFN GVFDDQNDNK SSVLSRFSSG DGMTLDFLGI GGSRNSGRIN  480
NSSDNNNNNI LHDHQEHQEL IIEFGSGGIN GGHHHHHHET RIQSLNPFQQ HAAASMEKPM  540
WEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-32186259372Zinc finger protein JACKDAW
5b3h_F4e-32186259372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_48.75
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898936.10.0protein indeterminate-domain 2-like isoform X2
SwissprotQ9SCQ61e-116IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLB9H5861e-178B9H586_POPTR; C2H2 family protein
STRINGevm.model.supercontig_48.750.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1964967
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-102indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]