PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_36.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 426aa    MW: 46844.8 Da    PI: 9.7874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_36.12genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05191213223
                                  EETTTTEEESSHHHHHHHHHH.T CS
                      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                  +Cp Cg+ F  ++nL+ H+ + H
  evm.model.supercontig_36.12 191 SCPECGEIFMKPENLELHQAVrH 213
                                  6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182190218IPR007087Zinc finger, C2H2
PROSITE patternPS000280192213IPR007087Zinc finger, C2H2
SuperFamilySSF563991.15E-22215424No hitNo description
Gene3DG3DSA:3.90.228.101.1E-16216423IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGKLKNKRNS ADETHQNQNK PPLKAEKPPS WALLRGIFNC KHIQPQDHEQ QQQKNQEPQQ  60
QGKQPKKQKQ QAVEEISSKK CKKMKCSGSL CSNTKVMHRP ETSSPEGQKK RASMEIASSR  120
SMKAPLQEIN GVGVVSSTNS SLSISSSSSI NGGSFRGMPF RRFSGCYECR MVVDPVLGIT  180
RDPSLRGSIS SCPECGEIFM KPENLELHQA VRHAVSELGP EDTSKNIVEI IFQSSWLKKQ  240
TPICKIDRIL KVHNTQKTIT KFEEYRDSIK AKATKFPKKH PRCIADGNEL LRFHCTTVAC  300
SLGLNGSSNL CNSIPHCNVC SIIKNGFKVA KEVDTKGILT TATSGKAHDK AGGVDQDGGN  360
EKRAMLVCRV IAGRVKKTTE GQGMGGMEEY DSVAGAVGLY SNLDELYVFN PKAILPCFVV  420
IYRGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_36.12
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900801.10.0uncharacterized protein LOC110816791
TrEMBLA0A314Y3020.0A0A314Y302_PRUYE; Uncharacterized protein
STRINGevm.model.supercontig_36.120.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-101C2H2-like zinc finger protein