PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_347.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 121aa    MW: 13699.8 Da    PI: 8.9025
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_347.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.63.3e-231662349
                                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  +n++n qvtfskRr+g++KKA+ELS+LCd+++a+i+fs++ k + +
  evm.model.supercontig_347.2 16 MSNETNLQVTFSKRRAGLFKKASELSTLCDVDIAMIVFSPSKKAFSF 62
                                 68**************************************9987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.679666IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-30665IPR002100Transcription factor, MADS-box
CDDcd002658.00E-32774No hitNo description
PRINTSPR004048.9E-19828IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-25985IPR002100Transcription factor, MADS-box
PfamPF003193.6E-251662IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MDRKGKGCQK IEMVKMSNET NLQVTFSKRR AGLFKKASEL STLCDVDIAM IVFSPSKKAF  60
SFGHPYVEKV IEDFICDNPP RDTSGAMTHI ETHRNSRIHE LNMILTQVIN QLEIEKNRNA  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-16783177Myocyte-specific enhancer factor 2A
3kov_B2e-16783177Myocyte-specific enhancer factor 2A
3kov_I2e-16783177Myocyte-specific enhancer factor 2A
3kov_J2e-16783177Myocyte-specific enhancer factor 2A
3p57_A2e-16783177Myocyte-specific enhancer factor 2A
3p57_B2e-16783177Myocyte-specific enhancer factor 2A
3p57_C2e-16783177Myocyte-specific enhancer factor 2A
3p57_D2e-16783177Myocyte-specific enhancer factor 2A
3p57_I2e-16783177Myocyte-specific enhancer factor 2A
3p57_J2e-16783177Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_347.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385901e-148AC238590.1 Carica papaya BAC clone 12I03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912035.14e-86agamous-like MADS-box protein AGL62
SwissprotQ9FKK27e-42AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLB9HN345e-49B9HN34_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_347.22e-85(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-44AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]