PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_347.14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 382aa    MW: 42061.5 Da    PI: 4.6321
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_347.14genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.6e-172064246
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                                  + en+   qvtfsk r  ++KKA+EL++LC  +v++i+fs+ ++ 
  evm.model.supercontig_347.14 20 KMENEASLQVTFSKHRSSLFKKASELCTLCRPDVCLIVFSPGNRA 64
                                  6799999*********************************98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-221170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.7031171IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-221282IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-141333IPR002100Transcription factor, MADS-box
PfamPF003193.7E-192067IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-143348IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-144869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MANEGTSSKS KGHQKIELKK MENEASLQVT FSKHRSSLFK KASELCTLCR PDVCLIVFSP  60
GNRAFCYGNP NIDIVIDRFL SIDVRPAQEK EEAARKRGKE LKQRRKGLKK ELWYTHSMDK  120
FSLEELEVFD AGMKALWNDV SELAKKLKKE QGNSSSAEGS PRDDGMFYSD PAMKALITLP  180
MPSMPSNPTH EYAPSSTNST PPLSRFCNLD SGNPTIMMMN NSLNDSCMAL DPVDDLKAMP  240
RDLFNNLVMI ESDDPIAALN AGDNPDIMSD AFGNQIATMD INLSNDPNIG PNEFFNPSTM  300
PHTPNDPISS TSNALNMIRI VPDDSNLHSV FDGFTLEMLF ADPLDDENFI VDNPNEAANG  360
DNPKTMPPPL AGNVLRSGQG F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_347.14
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4103950.0KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911410.10.0agamous-like MADS-box protein AGL62
STRINGevm.model.supercontig_347.140.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-29AGAMOUS-like 62