PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3189.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GATA
Protein Properties Length: 118aa    MW: 12445.8 Da    PI: 8.6696
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3189.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.4e-173773135
                          GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  evm.model.supercontig_3189.1 37 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 73
                                  *****99999***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-133082No hitNo description
PROSITE profilePS5011410.2113182IPR000679Zinc finger, GATA-type
SMARTSM004013.9E-173184IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-163578IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.75E-153684No hitNo description
PROSITE patternPS0034403764IPR000679Zinc finger, GATA-type
PfamPF003208.7E-153773IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MQRNKGQFTS SKKSEGGYNW GAVQESGQDD SQLETSCTHC GISSKSTPMM RRGPSGPRSL  60
CNACGLFWAN RGTLRDLSKK TQDQTLTPIE QGDGGGNEAG PGTAIHAQNS LNILVSK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912322.15e-78GATA transcription factor 25-like isoform X1
SwissprotQ9LRH64e-45GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2I4HT333e-56A0A2I4HT33_JUGRE; GATA transcription factor 25 isoform X1
STRINGevm.model.supercontig_3189.16e-82(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-47GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]