PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_30.48
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 510aa    MW: 53470.2 Da    PI: 6.9955
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_30.48genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.73.4e-411362424116
                          TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84 
                                   k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+
  evm.model.supercontig_30.48 136 VKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGST 217
                                  589****************************************************************999888888888874 PP

                          TCP  85 sssgkaaksaakskksqksaasalnlakesra 116
                                   s++       +sk++++s +  ++l+ ++ra
  evm.model.supercontig_30.48 218 LSAP-------PSKSAPHSFHGSSALQPHHRA 242
                                  4444.......333333333333333334443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-39139264IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496140194IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MELTDLQTNN NQTNNSSPQP HQTHHSSSSS SSHLLLPFDG RSGPGPSFMG SISIRSQPLP  60
TPSSASASSS SSSSSSSSPS SLSSSSSSST SASISSITTT TTPHLVDASL AIATRSTSLI  120
DSTNNNQQQI AATNPVKRST KDRHTKVDGR GRRIRMPATC AARVFQLTRE LGHKSDGETI  180
EWLLQQAEPA IIAATGTGTI PANFSTLNVS LRSSGSTLSA PPSKSAPHSF HGSSALQPHH  240
RAHYDEGGFA HTVSLLGFHH HQQQQHHLLT ADQIGDALAT GGDGGREDDG GGDSSDNYMR  300
KRFREDLFKE DNQPHNESGS GDGDGGSPIK SFKSGLQLPK PHQQTTSSGL MRSSNLLPAT  360
AMWAVAPAPN SSTFWMLPVT GGGGSGCSSV GGGAGPSESQ MWPFASGNPM QAPLHFMPRF  420
NVSSNVEYQG GQTSALQLGS MLMQQQQPSQ HLGLGISDSN LGMLAALNAY SRGGLNINSD  480
QQNNPMGHRH QQHQPQATDS GDEDPNSSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283291GGREDDGGG
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_30.48
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901654.10.0transcription factor TCP8-like
SwissprotQ9C5183e-85TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A061DWY90.0A0A061DWY9_THECC; TCP family transcription factor
STRINGevm.model.supercontig_30.480.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-71TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]