PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_30.166
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 92aa    MW: 10429.3 Da    PI: 10.3722
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_30.166genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.29.3e-181151343
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                  i n+s  + tf kR++g++KK +ELS+LCd++++ ii+s+ 
  evm.model.supercontig_30.166 11 ITNNSAIKATFKKRKKGLMKKVSELSTLCDVKACTIIYSPY 51
                                  88999999*******************************84 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-21160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-23184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.526149IPR002100Transcription factor, MADS-box
CDDcd002662.50E-17385No hitNo description
PRINTSPR004043.0E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSRKKVKLTY ITNNSAIKAT FKKRKKGLMK KVSELSTLCD VKACTIIYSP YDSQLDVWPS  60
PLGAQHVLAD FKRMPEMEQS KKKVNQESFL C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLTYITNNSAIKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_30.166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890886.13e-47agamous-like MADS-box protein AGL80
SwissprotQ9FJK34e-28AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLU5GF693e-43U5GF69_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_30.1661e-61(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-31M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]