PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_265.6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 193aa    MW: 22118.9 Da    PI: 9.9287
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_265.6genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.3e-151151343
                                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                 i n+s r+  f +R +g++KK +ELS+LCd++++ ii+s+ 
  evm.model.supercontig_265.6 11 ITNDSARKAMFKQRNKGLMKKVSELSTLCDVKACAIIYSPY 51
                                 89*************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.605149IPR002100Transcription factor, MADS-box
CDDcd002661.00E-27285No hitNo description
PRINTSPR004048.7E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-21395IPR002100Transcription factor, MADS-box
PfamPF003191.5E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTKKNVKLAY ITNDSARKAM FKQRNKGLMK KVSELSTLCD VKACAIIYSP YDSKQEVWPS  60
PFGAQCVLSD FKRLPEMEQS KKMVNQESFL CQKIAKATDQ LKKQCKDNRE KEITYIIFQS  120
LIGKPLHQLN LINLKNLGWL IEQYFKEIQK SIGTLWKSPQ PQEATDAGVM KGPKETFTKI  180
TEDHPVQMLQ QL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_265.6
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912473.11e-141agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-56AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A061F4E94e-69A0A061F4E9_THECC; Agamous-like MADS-box protein A
STRINGevm.model.supercontig_265.61e-140(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-58AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]