PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.35
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GATA
Protein Properties Length: 182aa    MW: 19506.4 Da    PI: 4.6622
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.35genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71.1e-154177135
                         GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                                 C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  evm.model.supercontig_21.35 41 CQHCGVGEnnTPAMRRGPAGPRTLCNACGLMWANKGT 77
                                 ****998888************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.9E-103588IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-113686No hitNo description
Gene3DG3DSA:3.30.50.108.8E-153982IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.93E-154084No hitNo description
PROSITE patternPS0034404168IPR000679Zinc finger, GATA-type
PfamPF003201.6E-134177IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MHRKNGQFAS LKESSGGSSW DSTQSCLHDG TPRPETVIRR CQHCGVGENN TPAMRRGPAG  60
PRTLCNACGL MWANKGTLRD LSKGGRNLSI DQNEPETPVD VKPSIMEGEF SANPDQHGSP  120
EDLSKALTER PSKDLHGAAN EVTNSLPMTI VHSSADDDEQ EPLVELANPS DTDIDIPSSF  180
D*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472433.11e-103PREDICTED: GATA transcription factor 24-like
RefseqXP_015384144.11e-103PREDICTED: GATA transcription factor 24-like
RefseqXP_006433795.11e-103hypothetical protein CICLE_v10001533mg
RefseqXP_006433794.11e-103hypothetical protein CICLE_v10001533mg
RefseqXP_006433796.11e-103hypothetical protein CICLE_v10001533mg
SwissprotQ8GXL73e-28GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A067GNE41e-103A0A067GNE4_CITSI; Uncharacterized protein
TrEMBLV4V5081e-103V4V508_9R
STRINGPOPTR_0002s11140.12e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-24ZIM-LIKE 2