PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.176
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 341aa    MW: 36376.6 Da    PI: 5.0512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.176genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.1e-16158204455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  evm.model.supercontig_21.176 158 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 204
                                   6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.26E-18150208No hitNo description
Gene3DG3DSA:4.10.280.108.0E-20151214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-20151214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-13158204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MADLYGAAPS STAPPEPEEI STFITQFLNT SSSSSSAHCM PFKPKYVHSF SSPPPPAANP  60
GPLLMEDRRW FAGSMGLPES ECRVREGNSG AVVDTSSSGI NFSDPQGYLG TNVKERTENT  120
FSSVAHLSCD TEGPDVSELP ANRVPARTSS KRSRAAEVHN LSEKRRRSRI NEKMKALQNL  180
IPNSNKTDKA SMLDEAIEYL KQLQLQVQML SMRNGLSLYP VCLPGVLQPM QLPPTGMGYH  240
DDGGLLNSAP GAGTISANEE SSVQTAYILP SQCASSSQSI AIPSVTNINA LETSFGFEPS  300
IQANYGPFNL TPTSEEICKE GKLELPLDAN RAGNSSSGVS *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017187.11e-110Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
SwissprotQ9FUA45e-47SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A061FCF41e-110A0A061FCF4_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGVIT_18s0001g10270.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
MalvidsOGEM41992754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-47bHLH family protein