PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 233aa    MW: 24956.2 Da    PI: 8.6603
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.100genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.4e-302104198
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 
                                   +C++C+vlr++C+++Cvl+ ++     +++q +++ +++k+FG+s +++l++a+p+++r+++++sl+yeA+ r+ +Pv+Ga
  evm.model.supercontig_21.100   2 SCNGCRVLRKGCSENCVLRSCLhwiesAEAQGNATLFLAKFFGRSDLMSLISAVPQSQRPALFQSLLYEACGRTVNPVNGA 82 
                                   6*********************9999777889************************************************* PP

                        DUF260  77 vgvilklqqqleqlkaelallk 98 
                                   vg++++++++++q+++e++l++
  evm.model.supercontig_21.100  83 VGLLSTGNWHVCQAAVETVLAG 104
                                   ****************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.8811107IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCVLR SCLHWIESAE AQGNATLFLA KFFGRSDLMS LISAVPQSQR  60
PALFQSLLYE ACGRTVNPVN GAVGLLSTGN WHVCQAAVET VLAGGPLRPI PGVLTGAWTA  120
NSNESSDGFS AVACTGRSAY PQSSRPSITS HASWEGREPS DLGLSLTLRG RRGRGRSCSQ  180
VERPNVYPQP SFYSGESEVT TMTMRTTASF EGGGDDRRMR GVSERKLLNL FV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903483.11e-170LOB domain-containing protein 37-like
SwissprotQ9SZE88e-66LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A067LAV82e-86A0A067LAV8_JATCU; Uncharacterized protein
TrEMBLA0A1R3H2K12e-86A0A1R3H2K1_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_21.1001e-170(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.16e-67LOB domain-containing protein 37