PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_209.13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 245aa    MW: 26578.4 Da    PI: 7.2571
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_209.13genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.89.6e-3523120289
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec...e 74 
                                   ++kkdrhski T++g++dRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++          se+   +
  evm.model.supercontig_209.13  23 TAKKDRHSKILTSKGPKDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDKLNQLppqenH----SESpgyN 99 
                                   78**************************************************************533220....3332333 PP

                           TCP  75 aesssssasnsssg.........k 89 
                                   ++s  + +s    +         +
  evm.model.supercontig_209.13 100 PASTINFQS---YPqdiiistnpN 120
                                   333333333...222334443321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-312396IPR005333Transcription factor, TCP
PROSITE profilePS5136931.192583IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGMKSNGGDN ILNFNGGNIL RSTAKKDRHS KILTSKGPKD RRVRLSAHTA IQFYDVQDRL  60
GYDRPSKAVD WLINKAKSAI DKLNQLPPQE NHSESPGYNP ASTINFQSYP QDIIISTNPN  120
RTQDLGLSLQ SFQNSPLNTS HISSTDQTQF LNSAPVGFVS NFQRSMVGWS STSPLPASQR  180
EIFGQGLTSF PQSGDDMPIG SAIVGTRYVS DGLPAFHFPF LIHGEEESGG VSDTPSSSPP  240
DSNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-203083154Putative transcription factor PCF6
5zkt_B4e-203083154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_209.13
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887176.11e-179transcription factor TCP10-like
SwissprotO822771e-39TCP10_ARATH; Transcription factor TCP10
TrEMBLA0A1Q3C6T33e-71A0A1Q3C6T3_CEPFO; TCP domain-containing protein
STRINGevm.model.supercontig_209.131e-178(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.15e-42TCP domain protein 10
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]