PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_20.16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GATA
Protein Properties Length: 335aa    MW: 37589 Da    PI: 9.2669
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_20.16genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16231267135
                         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                  C++Cg+++  Tp +Rrgp g+++LCnaCGl+++ kg+
  evm.model.supercontig_20.16 231 CQHCGVSEkfTPAMRRGPAGPRSLCNACGLMWANKGT 267
                                  **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513209.5596196IPR010399Tify domain
PROSITE profilePS5101712.61163205IPR010402CCT domain
PfamPF062035.3E-15163204IPR010402CCT domain
SMARTSM004019.2E-9225278IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-11228279No hitNo description
Gene3DG3DSA:3.30.50.101.8E-14230272IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.03E-14230273No hitNo description
PROSITE patternPS003440231258IPR000679Zinc finger, GATA-type
PfamPF003201.6E-14231267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEMVNPQPLQ ARSFGGKGYG LAQIPMQIDK DELDGRQIDT MNGVEETGVS SVNYGDGAVA  60
RTNRTSELTV AFEGEVYVFP AVTPQKDSLV MLRNFKINCE HQQHSMPPCV AHDLSQSNPW  120
VQAVLLLLGG ADTPTSVPIT DFLLQQNIRV VGEASQDSKL SKRIASLVKF REKRKERCFE  180
KKIRYSCRKE VAQRMHRKNG QFASLVECHD IAAGNWDPNV RTPSESCSGR CQHCGVSEKF  240
TPAMRRGPAG PRSLCNACGL MWANKGTLRD LTKNGRNISF NQSDLLFYKG NRLFTNVPRG  300
YCQEKRRAQV LENSKELYVY EAFFIYKEVL VKPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_20.16
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903630.10.0GATA transcription factor 19-like isoform X3
TrEMBLA0A2C9VID71e-101A0A2C9VID7_MANES; Uncharacterized protein
TrEMBLA0A2C9VIG71e-101A0A2C9VIG7_MANES; Uncharacterized protein
STRINGevm.model.supercontig_20.160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.18e-47ZIM-like 1