PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.89
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 611aa    MW: 65223 Da    PI: 9.6776
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.89genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-057294123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                + C+ C+k F r  nL+ H r H
  evm.model.supercontig_2.89 72 FICEVCNKGFQREQNLQLHRRGH 94
                                89*******************88 PP

2zf-C2H213.10.0003148170123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC++C+k++  +s+ k H +t+
  evm.model.supercontig_2.89 148 WKCEKCSKRYAVQSDWKAHSKTC 170
                                 58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.9E-67194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-77194No hitNo description
PROSITE profilePS5015710.997294IPR007087Zinc finger, C2H2
PfamPF121713.0E-57294IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355130113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-5136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-7143168No hitNo description
SMARTSM00355130148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MAAASSSAPF FVAGEDNQNQ MIQVQQHSST TVSSTVPNTA PPKKKRNQPG NPNPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEVKR KVYLCPEPTC  120
VHHDPSRALG DLTGIKKHYS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESARHPTSL NTLATHHLYG NNHMSLGLTQ VSNNSQISSL  240
QDPNSVPSAA NILRLGSTTT GGGPKFEHLI NPTSTNPSSL QPNLPPSAAA FFLQDANQGL  300
IQDQHGVVSF QNKPIHGLMQ LPDLQSNTTN SPSSANLFNL GFFSNNSSTS SITNSENTNT  360
TNLQNSGFLG ANQFNNGNNG SQGTTSIFSN NLGDHSGSGL SSLYTSSVQH EAISPHMSAT  420
ALLQKAAQMG STTSSNSTST LLRGLSGGGS SSTAGKPDRS IMPTNFGGNF GSNTDQSLRS  480
QIDNDTNLQG LMNSLVNGGS TIFGSGSGGG GGGRQGQDHS FVSFSAGGGM SNFGGVDEAK  540
LHQNLAGSDK LTLDFLGVGG VVRNISGGFS HRDQQQHQQQ LGMNMSSLEQ EAAKSNSQQP  600
TQAFGRTKLH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34144205364Zinc finger protein JACKDAW
5b3h_F1e-34144205364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.89
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909907.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_021909908.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_021909909.10.0protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-139IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A061EG080.0A0A061EG08_THECC; Indeterminate(ID)-domain 5, putative isoform 2
STRINGevm.model.supercontig_2.890.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-120indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]