PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.88
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 560aa    MW: 61007.6 Da    PI: 9.3867
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.88genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-057193123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                + C+ C+k F r  nL+ H r H
  evm.model.supercontig_2.88 71 FICEVCNKGFQREQNLQLHRRGH 93
                                89*******************88 PP

2zf-C2H213.20.00027147169123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC++C+k++  +s+ k H +t+
  evm.model.supercontig_2.88 147 WKCEKCSKRYAVQSDWKAHSKTC 169
                                 58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.47E-77093No hitNo description
PROSITE profilePS5015710.997193IPR007087Zinc finger, C2H2
PfamPF121712.7E-57193IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355170112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.47E-7142167No hitNo description
SMARTSM00355130147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MAASSSSVPL FGIREENQNQ MRQQQHSSTP APSAVQAPQP PKKKRNQPGT PNPDAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEVKRK VYLCPDPTCV  120
HHDPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARHPPSIS TISSHLYGNN NNVAAAGLGL SQLGPQVPSL  240
QDQTTSQSTH APPTQFDHLL PSHSTFRHHH QQNPAASPAF FMQEPNQQDL LSNNKQFHGL  300
MQMAPGNNTT SLFNLGYNSS NDGGGKHSST TNLPSSGFLV PNHFNNENGT SGVDVVGGEG  360
STLFPNNLMT DQISSGLSSL FGTPIQGGSI NNMMPHMSAT ALLQKAAQMG STSSNNTASL  420
LRNKSNFASI FSENEANNLH ELMNSFSSGS PSILGGGYGE DHQNPYGEER QRHGPNTFGN  480
LDEQKLHQNM SANIGGSDRL TRDFLGVGQI VRSMSGGISQ REKQQQATMD ISSLESERNR  540
TGNAGPTTSQ SFGGGGNFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-35143204364Zinc finger protein JACKDAW
5b3h_F8e-35143204364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.88
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4550951e-120AM455095.1 Vitis vinifera contig VV78X055432.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909848.10.0protein indeterminate-domain 5, chloroplastic isoform X1
SwissprotQ9ZUL31e-146IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLU5G1I00.0U5G1I0_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_2.880.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-143indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]