PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.17
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GATA
Protein Properties Length: 97aa    MW: 10970 Da    PI: 10.8115
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.17genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.72.1e-10328934
                        GATA  9 TplWRrgpdgnktLCnaCGlyyrkkg 34
                                Tpl R+gp +++ LCnaCGl+y+++g
  evm.model.supercontig_2.17  3 TPLPRNGPPKKPILCNACGLRYKLNG 28
                                999*****88888***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.33E-6244No hitNo description
CDDcd002021.51E-8328No hitNo description
PfamPF003209.6E-8328IPR000679Zinc finger, GATA-type
SMARTSM004010.0029341IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-8330IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MGTPLPRNGP PKKPILCNAC GLRYKLNGAK SLINYVPKQV QLNLTNMKRK WKKLYKNTKR  60
AKPLPQQVVV KIEPVEIDDN SFYVNPLSFP QHNPTT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.17
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_2.177e-64(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1890268
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.16e-11GATA transcription factor 27