PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_199.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 369aa    MW: 41825.1 Da    PI: 8.3818
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_199.10genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.1e-1646106156
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 
                                   s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++ge
  evm.model.supercontig_199.10  46 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWGE 106
                                   57*******************999955656446*************************997 PP

2AP251.23.2e-16148199155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  evm.model.supercontig_199.10 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 199
                                   89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-1746115IPR016177DNA-binding domain
CDDcd000185.55E-1146115No hitNo description
PfamPF008474.3E-1246106IPR001471AP2/ERF domain
SMARTSM003804.8E-2747119IPR001471AP2/ERF domain
PROSITE profilePS5103220.28447113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1647114IPR001471AP2/ERF domain
PRINTSPR003674.3E-64859IPR001471AP2/ERF domain
CDDcd000184.24E-24148209No hitNo description
SuperFamilySSF541711.11E-17148209IPR016177DNA-binding domain
PfamPF008475.9E-12148199IPR001471AP2/ERF domain
PROSITE profilePS5103218.334149207IPR001471AP2/ERF domain
SMARTSM003801.2E-24149213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17149208IPR001471AP2/ERF domain
PRINTSPR003674.3E-6189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description