PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.121
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 377aa    MW: 40842.3 Da    PI: 4.8037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.121genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1980130155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa a+++a+k+++g
  evm.model.supercontig_19.121  80 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAVEAALAYDEAAKAMYG 130
                                   56*****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.01E-3180140No hitNo description
PfamPF008476.6E-1480130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2981139IPR001471AP2/ERF domain
PROSITE profilePS5103221.49681138IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2081139IPR016177DNA-binding domain
SMARTSM003809.1E-3581144IPR001471AP2/ERF domain
PRINTSPR003679.8E-108293IPR001471AP2/ERF domain
PRINTSPR003679.8E-10104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGTFDQAPNV TSIAVDSSRK RKSRSRRDGT SVAETLKKWK EYNEHLDASG DGGKPARKVP  60
AKGSKKGCMK GKGGPENSRC NYRGVRQRTW GKWVAEIREP NRGSRLWLGT FPTAVEAALA  120
YDEAAKAMYG PCALLNLPHA EDLVCFGTAS GSSVATPSGS DSTTTSSHSE VCAADDIKQE  180
FVAIPGLKKE DGQGEARPNA YPHAVIETAT PSSTMKLEAK DGDANIKKLH SGEYHGIKGE  240
AVDYSKDVKS EGKEDESQDY WQTFSMDEMF DVDDLLGAID NDPLVGTGLK QEFDYPPVQV  300
GITDSRLQSE KSSALAYQLQ NPDAKLLGSL HHMEQLPSTV DYGLALLQAQ EHGDNNIELD  360
GQGFMDMDIG LEDLDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1881138260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-17821431577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKS
22027RKSRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.121
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4328680.0KJ432868.1 Carica papaya cultivar Maradol dehydration-responsive element-binding protein 2A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904202.10.0dehydration-responsive element-binding protein 2C-like
RefseqXP_021904203.10.0dehydration-responsive element-binding protein 2C-like
TrEMBLA0A185EKL60.0A0A185EKL6_CARPA; Dehydration-responsive element-binding protein 2A
STRINGevm.model.supercontig_19.1210.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-44ERF family protein