PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_185.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 100aa    MW: 11668.6 Da    PI: 10.0217
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_185.12genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.47e-171150342
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                  i n+s r+ tf kR+n ++KK +ELS+LCd++++ ii+s+
  evm.model.supercontig_185.12 11 ITNNSARNATFKKRKNELMKKVSELSTLCDIKACEIIYSP 50
                                  89************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.259149IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-17160IPR002100Transcription factor, MADS-box
CDDcd002661.61E-26285No hitNo description
SuperFamilySSF554552.09E-20295IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MTRKKVNLAY ITNNSARNAT FKKRKNELMK KVSELSTLCD IKACEIIYSP YDLQPDLWFF  60
PLGGQHVLVD FKRMPEMEQS KKMVHQESFM HQRITKATD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLAYITNNSARNATFKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_185.12
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887774.18e-68agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-32AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLU5GF696e-44U5GF69_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_185.124e-70(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-34AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]