PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_17.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 371aa    MW: 41374.3 Da    PI: 9.8724
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_17.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.54.7e-38712242137
                         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssa 70 
                                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el++               + +++
  evm.model.supercontig_17.1  71 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSInsafpdtpkdekrvDGDPN 153
                                 689************************************************************99999876666665544444 PP

                         TCP  71 seceaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknkln 137
                                  + ++ +++++++n++++ +++++a+s++s++s++s l+l++      r+kar rarer ++++  +n++n
  evm.model.supercontig_17.1 154 YQQNQTQNQNQNQNQTQNLSMSKSACSSNSETSKNSGLSLSRseirVNRNKARDRARERVAKEKESNNHQN 224
                                 4445666666666666668888888999999999999999986444556*********6555544444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-4172218IPR005333Transcription factor, TCP
PROSITE profilePS5136931.10573131IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.035199217IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEVEEIQTHA CKFPRVGNGR KESNKLGQRE SEQQYPDDED DRGLIKRVSN SNSSNIGGWH  60
HSRIIRVSRA SGGKDRHSKV WTSKGLRDRR VRLSVTTAIQ FYDLQDRLGY DQPSKAVEWL  120
IKAASDAIAE LPSINSAFPD TPKDEKRVDG DPNYQQNQTQ NQNQNQNQTQ NLSMSKSACS  180
SNSETSKNSG LSLSRSEIRV NRNKARDRAR ERVAKEKESN NHQNANPISQ NSSFTELLTA  240
GIHTQNPTAE ANLFHKGRQW STTGTPMDYF TSGLVGPSSR THQSSGFTGQ IQLGSPQIPP  300
FNSNSSSLCL TPEVSFSYRR TKCTLLYGTP PADQNHHHHH QFSPGFDGRL QLCYGDGSRQ  360
HSDHKGKGKN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2378132155Putative transcription factor PCF6
5zkt_B3e-2378132155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_17.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904634.10.0transcription factor TCP2
SwissprotQ93V431e-65TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A1Q3C4491e-138A0A1Q3C449_CEPFO; TCP domain-containing protein
STRINGevm.model.supercontig_17.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-65TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]