PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1622.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GeBP
Protein Properties Length: 386aa    MW: 43165.1 Da    PI: 5.2848
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1622.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.97.3e-34166253298
                        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 
                                   lfqr+wse+Deiv+L+G++++ +k+g++p++d+daf++f+kks++ ++sksql++KirrL++K+ k++k         fsk
  evm.model.supercontig_1622.1 166 LFQRVWSEDDEIVVLKGMLEYMSKKGTNPVSDMDAFHDFIKKSLHCDFSKSQLMDKIRRLRNKYSKNRK---------FSK 237
                                   79**************************************************************98764.........6** PP

                        DUF573  83 ehdqkifelskkiWgs 98 
                                   +h+qk+ +ls+kiWgs
  evm.model.supercontig_1622.1 238 PHEQKASDLSRKIWGS 253
                                   **************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-29167252IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAPKRPNPME EPPTASSTED EEEKEEESSE GEEEEEDEDE DEPGKASKPD VNSPAAATAG  60
KKTQSSESES GTDSESETDS DSEMRPQVAN SNVKPIATKP MDETPKSKKL RSKPAASPAK  120
SAMKRASETA QDSKEAKRAK KEQEGKSDVV PDKEGKKSGE EVKKQLFQRV WSEDDEIVVL  180
KGMLEYMSKK GTNPVSDMDA FHDFIKKSLH CDFSKSQLMD KIRRLRNKYS KNRKFSKPHE  240
QKASDLSRKI WGSEGNGGAI ESTIKSNGKK NQKGNVKALT TLKADLFPRD DKEGEKEGKK  300
KIVSDENNIF SLCASEITGF DKILGLPALD ERVVMEGLNL LDPVKKAEFE GKWKKYRIAQ  360
MELFLQRTDL IQEQAKLMLE AYKTDX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0109880.0CP010988.1 Carica papaya chromosome Y sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467953.11e-102PREDICTED: mediator-associated protein 1
TrEMBLA0A067G7L71e-102A0A067G7L7_CITSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Representative plantOGRP4222523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.14e-31DNA-binding storekeeper protein-related transcriptional regulator