PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_158.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 542aa    MW: 56416.1 Da    PI: 8.6501
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_158.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056183123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                 ++C++C+k F r  nL+ H r H
  evm.model.supercontig_158.1 61 FVCEICNKGFQRDQNLQLHRRGH 83
                                 89*******************88 PP

2zf-C2H211.10.0013137159123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  +kC +C+k +  +s+ k H + +
  evm.model.supercontig_158.1 137 WKCDKCSKKYAVQSDWKAHSKIC 159
                                  58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.61E-76083No hitNo description
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355220102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.61E-7132157No hitNo description
SMARTSM00355150137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MPVDLDNSST ASGEASVSSS GNQNPPPKSA AKKKRNLPGM PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPESTCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARAKTQTP SQNQKQAQTQ NQVVVNSNPE SDSNVQAMDS SPPATPAPVP  240
AKAQAQITTP SPAPAPAPAQ SQTQVPTQST GMVFSSVLPV QNSEMPESST QVMEEAPMTA  300
GLNGSSSSSN SASSSSSASS SVFASLFASS AASGRLQTSQ PPAFTDLIRA VSRPDCPAEL  360
APSSSTEPIS LCLSTSHGSS IFGTAGQERR QYAPPPQPAM SATALLQKAA QMGAAATNAS  420
LLRGFGIVSS SSTSSQQENL QWGSGQVEPD NASVHAGLGL GLPCDGGSGL KELMMATPSV  480
FGPKQTTLDF LGLGMAAGGS PTSSLSALIT SIGGGIDVAA AAAAASFGGG EFSGKDIGRT  540
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33133197367Zinc finger protein JACKDAW
5b3h_F1e-33133197367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888880.10.0protein indeterminate-domain 2-like
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A067K9Z70.0A0A067K9Z7_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_158.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-114C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]