PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_151.51
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GATA
Protein Properties Length: 91aa    MW: 10021.6 Da    PI: 10.6125
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_151.51genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.23.1e-20842135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C+ C+tt TplWR gp g+++LCnaCG++yrkk++
  evm.model.supercontig_151.51  8 CADCHTTRTPLWRGGPAGPRSLCNACGIRYRKKRR 42
                                  ********************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.033238IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-15258IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-14543No hitNo description
Gene3DG3DSA:3.30.50.102.1E-16642IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.96E-12742No hitNo description
PROSITE patternPS003440833IPR000679Zinc finger, GATA-type
PfamPF003203.2E-18842IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MDTRNKSCAD CHTTRTPLWR GGPAGPRSLC NACGIRYRKK RRVVLGVNRD QRGEKSQRKK  60
SKDGVSFKLG EEEQAAFLLM ALSCSSVFCA *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_151.51
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889186.11e-61GATA transcription factor 15-like
SwissprotQ8LG101e-25GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A1R3IHI15e-32A0A1R3IHI1_9ROSI; Zinc finger, GATA-type
STRINGevm.model.supercontig_151.519e-61(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17347611
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.16e-28GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]