PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_151.51
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GATA
Protein Properties Length: 91aa    MW: 10021.6 Da    PI: 10.6125
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_151.51genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.23.1e-20842135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C+ C+tt TplWR gp g+++LCnaCG++yrkk++
  evm.model.supercontig_151.51  8 CADCHTTRTPLWRGGPAGPRSLCNACGIRYRKKRR 42
                                  ********************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.033238IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-15258IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-14543No hitNo description
Gene3DG3DSA:3.30.50.102.1E-16642IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.96E-12742No hitNo description
PROSITE patternPS003440833IPR000679Zinc finger, GATA-type
PfamPF003203.2E-18842IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MDTRNKSCAD CHTTRTPLWR GGPAGPRSLC NACGIRYRKK RRVVLGVNRD QRGEKSQRKK  60
SKDGVSFKLG EEEQAAFLLM ALSCSSVFCA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490362.18e-33PREDICTED: GATA transcription factor 16-like
SwissprotQ8LG101e-26GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A0D2SC659e-33A0A0D2SC65_G
STRINGSolyc09g075610.2.13e-29(Solanum lycopersicum)
STRINGPGSC0003DMT4000814177e-29(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
MalvidsOGEM17347611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.16e-28GATA transcription factor 15