PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_128.6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 388aa    MW: 41859.2 Da    PI: 9.1549
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_128.6genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.41.7e-4072191189
                          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 
                                  +a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss
  evm.model.supercontig_128.6  72 PAPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSS 153
                                  589*******************************************************************999766666666 PP

                          TCP  82 asnsssg..............................k 89 
                                  +s+ s++                              +
  evm.model.supercontig_128.6 154 GSTISAShlrstyfhpnfaaqqlrirnewernfvldeQ 191
                                  66433334444555444444445555555555555440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-4077256IPR005333Transcription factor, TCP
PROSITE profilePS5136927.58279133IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDSENGIRRP NFPLQLLEKR EHHNHQQPPS SSSSSVYNTS SSLLGSTESN PNVNASRQAV  60
SNAQESAAAK KPAPKRTSTK DRHTKVEGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE  120
WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSTISAS HLRSTYFHPN FAAQQLRIRN  180
EWERNFVLDE QQRRSIMFPV ASDDNPLCNF PGSSSTNSNN NVSAFLRAKQ ELRDVTMEVS  240
HDGGDHSRKR RPLVEQENQM GNTYLIQSST GSIPASHSPI PATFWTVASP SSSQMMVGSD  300
NMWPFSSMSG STIPSGVHFM NFPTPIALLP GQQTTHNNSV GGDSHLGMLA ALNAYRPVPT  360
GTGNISGSDQ ASGSHHQHHG GGGEEGA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_128.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890638.10.0transcription factor TCP15
TrEMBLA0A061EAE71e-138A0A061EAE7_THECC; TCP family transcription factor, putative
STRINGevm.model.supercontig_128.60.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Representative plantOGRP26991230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.15e-52TCP family protein