PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_117.22
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 56aa    MW: 6344.74 Da    PI: 11.3507
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_117.22genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.91.5e-091134328
                                  --SHHHHHHHHHHHHHHHHHHHHHHH CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELS 28
                                  i+nk+ r+vtf +R++g+lKK  ELS
  evm.model.supercontig_117.22 11 ISNKTARKVTFNQRKKGLLKK--ELS 34
                                  9*******************9..555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-4150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.46139IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-9139IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-71138IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
MAKKNIKIAL ISNKTARKVT FNQRKKGLLK KELSFIVLTM LSLMFDLCQR ESTKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_117.22
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_117.221e-30(Carica papaya)