PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.438
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 226aa    MW: 25052 Da    PI: 5.5031
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.438genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.42.8e-3971071100
                       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                  +C aCk+lrrkC+++Cv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v+ i+
  evm.model.supercontig_1.438   7 SCGACKFLRRKCTSGCVFAPYFCYDQaTTHFAAVHKVFGASNVSKLLLHLPVQKRSDAAITISYEALARMRDPIYGCVAQIF 88 
                                  6************************9779***************************************************** PP

                       DUF260  82 klqqqleqlkaelallkee 100
                                  +lqqq+++l++e++ l+++
  evm.model.supercontig_1.438  89 ALQQQVARLQEEIEILGTQ 107
                                  *************998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4986108IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-377103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCTS GCVFAPYFCY DQATTHFAAV HKVFGASNVS KLLLHLPVQK  60
RSDAAITISY EALARMRDPI YGCVAQIFAL QQQVARLQEE IEILGTQMAN FVVAAPNGIS  120
TQATTYQNNK SQFGSPYPHE TMNTMHCHQA ASVNHTGYTT GNQTFDSQMN GQLPPYAWDD  180
ENFLCDSYTN PFTRSTEEVD PEIFANYLWL DSSNNTINLE GINWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3831217124LOB family transfactor Ramosa2.1
5ly0_B1e-3831217124LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.438
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910245.11e-172LOB domain-containing protein 33-like
SwissprotQ9LHS82e-59LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A067LJS23e-95A0A067LJS2_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_1.4381e-171(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.18e-62LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]