PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_43014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 108aa    MW: 12182.3 Da    PI: 11.2171
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_43014.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.81.4e-231864349
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           i+  +n qvtf+kRr+gi+KKA+E+S+LC+aevaviifs+  k++ +
  evm.TU.contig_43014.1 18 IKKATNLQVTFAKRRAGIFKKASEISTLCGAEVAVIIFSPAKKVFSF 64
                           8999***************************************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-31867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.768868IPR002100Transcription factor, MADS-box
CDDcd002658.86E-34976No hitNo description
SuperFamilySSF554551.44E-27982IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-201030IPR002100Transcription factor, MADS-box
PfamPF003191.7E-231764IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-203045IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-204566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MEPHRKSKGR QKIEMVKIKK ATNLQVTFAK RRAGIFKKAS EISTLCGAEV AVIIFSPAKK  60
VFSFGSPSVE KLINRFNGLI EQPPSANRRM MDAHRNPYLQ GLNLQLNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-16978170Myocyte-specific enhancer factor 2A
3mu6_B3e-16978170Myocyte-specific enhancer factor 2A
3mu6_C3e-16978170Myocyte-specific enhancer factor 2A
3mu6_D3e-16978170Myocyte-specific enhancer factor 2A
6byy_A4e-16992283MEF2 CHIMERA
6byy_B4e-16992283MEF2 CHIMERA
6byy_C4e-16992283MEF2 CHIMERA
6byy_D4e-16992283MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_43014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386371e-129AC238637.1 Carica papaya BAC clone 99B01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910885.19e-75agamous-like MADS-box protein AGL62, partial
SwissprotQ9FKK21e-34AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A067L1455e-38A0A067L145_JATCU; Uncharacterized protein
STRINGevm.TU.contig_43014.14e-74(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-37AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]