PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_41453.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21851.1 Da    PI: 10.6908
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_41453.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.42.1e-191654341
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                            +n+sn qvtfskRr+ ++KKA+ELS+LC+ae+a+i+f+
  evm.TU.contig_41453.1 16 MNNESNLQVTFSKRRARLFKKASELSTLCGAEIAIIVFA 54
                           689**********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.745654IPR002100Transcription factor, MADS-box
SMARTSM004326.5E-22665IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-20782IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-14828IPR002100Transcription factor, MADS-box
PfamPF003191.4E-191654IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-142843IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-144364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MARKSKGRQK VEMAKMNNES NLQVTFSKRR ARLFKKASEL STLCGAEIAI IVFAFGHPCV  60
QTVLERFVSG NPPQAASGTM KLIEAHRNTS VRELNMQLTQ VLNQLEIEKK RGEELNHMKK  120
ANENQCWWMA RKNDMSLTQL QQLKASLDEL KKNVAKQAEK IVIHTQNNHH PHPHPHHHHP  180
NHPFFLGSSS GG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_41453.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385901e-109AC238590.1 Carica papaya BAC clone 12I03, complete sequence.
GenBankAC2386371e-109AC238637.1 Carica papaya BAC clone 99B01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911941.11e-115agamous-like MADS-box protein AGL62, partial
SwissprotQ9FKK21e-49AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A067EEZ44e-81A0A067EEZ4_CITSI; Uncharacterized protein
STRINGevm.TU.contig_41453.11e-141(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-52AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]