PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_39804.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 352aa    MW: 39896.8 Da    PI: 6.5889
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_39804.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.34.8e-141153345
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                           ien+  r  ++ kRr g+ KK  EL++LC++ ++++i+s++ k
  evm.TU.contig_39804.1 11 IENDNARRASLKKRRVGVVKKVGELCTLCNVSACIVIYSPEEK 53
                           9**************************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.643153IPR002100Transcription factor, MADS-box
CDDcd002661.55E-26285No hitNo description
SuperFamilySSF554551.44E-20293IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-7323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-141153IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MTRKKVKLAL IENDNARRAS LKKRRVGVVK KVGELCTLCN VSACIVIYSP EEKEPRVWPS  60
VEMAVQMLNR FRRMPEMDRN KRTMNQESYL RERSRKTEEQ LKKNQRKNQE KEMVNLICKV  120
HEGNNFDELN LGELYGLAWL IEEKVKSVNK RLAFLNHMTI PVGLDPLYPT PHAQVIYDQT  180
HEVGGNEGNN QVRDIIDNQD QGAFTVEPWL FDIMNNNNNI DGGFGSIGDN PTTNDIKTLP  240
HQITYGRNSN NIGNSVSNND HQMGLQAPLK NFKLPQSSSG LVDIMEMPLY ENSKGHDATS  300
VGDISHSSHI HTTDYPIGIA FELLQPPDGG QEVFSISNET TMLDYGHLFG NX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLALIENDNARRASLKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_39804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911020.10.0agamous-like MADS-box protein AGL23, partial
STRINGevm.TU.contig_39804.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-34AGAMOUS-like 80